Explain Podcast Podcast Por explain.pod arte de portada

Explain Podcast

Explain Podcast

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The Podcast Explain is for everyone interested in DNA/RNA sequencing or technology in general. As Iuliia doesn't have a solid background in sequencing, she keeps asking "simple" - even silly at times - questions and Daniel gives his best to make us understand.explain.pod Ciencia Historia Natural Naturaleza y Ecología
Episodios
  • Special: other Nanopore Sequencing
    Mar 20 2026

    We have the same thing at home!

    - yes, but in worse, cheaper or both


    Qitan:

    https://pmc.ncbi.nlm.nih.gov/articles/PMC8985760/

    https://www.qitantech.com/

    The QPinnacle2:

    https://www.vcbeathealth.com/article/1821


    CycloneSEQ, the MGI-internal clone:

    https://en.cyclone-seq.com/nanopTech

    https://www.prnewswire.com/news-releases/mgi-launches-new-nanopore-sequencing-products-with-advanced-cycloneseq-technology-302241816.html

    https://www.biorxiv.org/content/10.1101/2024.08.19.608720v1

    https://rrwick.github.io/2024/12/17/cycloneseq.html

    https://gigabytejournal.com/articles/154

    https://gigasciencejournal.com/blog/open-cycloneseq-benchmarking-for-complete-bacterial-genomes/


    Polyseq:

    https://polyseq.com/


    Axbio:

    https://www.axbio.cn/products/45.html


    Geneus-tech:

    http://www.geneus-tech.com/proddetail.aspx?id=1


    Nice not up-to-date table of specs:

    https://github.com/zhangtianyuan666/NanoporeReview2024


    ONT to double promethion throughput: https://www.genomeweb.com/sequencing/jpm-oxford-nanopore-shares-plans-double-flow-cell-output-expand-menu-biopharma-market

    Más Menos
    39 m
  • News: AlphaGenome, Vibecoding
    Mar 10 2026

    Artificial Intelligence everywhere, and sometimes its useful.


    Correction: apparently the Biostar Handbook is not free anymore :(


    AlphaGenome:

    https://omicsomics.blogspot.com/2026/02/non-coding-dnas-alpha-moment.html

    https://www.alphagenomedocs.com/installation.html

    https://www.genomeweb.com/informatics/google-alphagenome-users-scrutinize-ai-models-ability-predict-variant-effects

    https://deepmind.google.com/science/alphagenome/


    Bioinformatics Forums:

    Bioinformatics mistakes on Biostars: https://www.biostars.org/p/7126/

    Bioinformatics stackexchange:

    https://bioinformatics.stackexchange.com/

    Seqanswers:

    https://www.seqanswers.com/forum/sequencing-technologies-companies


    Vibecoding (current setup, top to bottom):

    https://claude.ai/new

    https://gemini.google.com/app

    https://duck.ai/


    If danger is something you enjoy, use this:

    https://openclaw.ai/

    YOU HAVE BEEN WARNED


    Paper about old LLMs that can solve simple, old and solved bioinformatics problems:

    https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011511


    Youtube has useful bioinformatics courses:

    1: https://www.youtube.com/watch?v=3XFpxQF0J74&list=PLWVKUEZ25V95IKyBrxHtRTK_6Ig8Xi9-f

    2: https://www.youtube.com/watch?v=LvtPXZHNoCc&list=PLeB-Dlq-v6taAXK6ZCGfqImrNWJzFt3p3

    Más Menos
    36 m
  • News: PacBio, Illumina, Nanopore...
    Feb 20 2026

    When do you get your Illumina sticker for your ONSO?


    This is the first part of a two-parts news roundup.


    PacBio News:

    https://aseq.substack.com/p/pacbio-sells-short-read-tech-to-illumina

    https://www.pacb.com/press_releases/pacbio-completes-sale-of-short-read-sequencing-assets/

    https://albertvilella.substack.com/p/pacbio-sells-short-read-ip-to-illumina


    The 6-base sequencing run:

    https://www.pacb.com/wp-content/uploads/PAG-5hmC-Portik.pdf

    https://www.nature.com/articles/s42003-025-07681-0


    ONT's P2 solo drama:

    https://omicsomics.blogspot.com/2026/01/p2-solo-ont-extends-support-but-not.html

    Más Menos
    25 m
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